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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttcgcttcttggcctaactttagcctatgtgtaatacattctgagaaaaatcatgtcatgttttgatatctaactatgatcttaaactggctacctcaaaatcagAGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG

Basic information

species Arabidopsis thaliana
transcript AT1G28100.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043029|gb|DR338784.1|DR338784
EST:     TGATAGTGCTGCTTCTACTGATATCTGCAACATCCAAATTAGATCAGACG                         AGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAA
genomic: TGATAGTGCTGCTTCTACTGATATCTGCAACATCCAAATTAGATCAGACGgtgagttctt ... tcaaaatcagAGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAA
EST: gi|19799902|gb|AU231192.1|AU231192
EST:     TCTGCAACATCC-AATTAGATCAGACG                         AGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA
genomic: TCTGCAACATCCAAATTAGATCAGACGgtgagttctt ... tcaaaatcagAGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA
EST: gi|164006153|gb|ES021145.1|ES021145
EST:     TTCTACTGATATCTGCAACATCCAAATTAGATCAGACG                         AGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA
genomic: TTCTACTGATATCTGCAACATCCAAATTAGATCAGACGgtgagttctt ... tcaaaatcagAGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA
EST: gi|86079751|gb|DR375508.1|DR375508
EST:     TGATAGTGCTGCTTCTACTGATATCTGCAACATCCAAATTAGATCAGACG                         AGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA
genomic: TGATAGTGCTGCTTCTACTGATATCTGCAACATCCAAATTAGATCAGACGgtgagttctt ... tcaaaatcagAGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA
EST: gi|86081816|gb|DR377575.1|DR377575
EST:     TGATAGTGCTGCTTCTACTGATATCTGCAACATCCAAATTAGATCAGACG                         AGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA
genomic: TGATAGTGCTGCTTCTACTGATATCTGCAACATCCAAATTAGATCAGACGgtgagttctt ... tcaaaatcagAGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgtcatgttttgatatctaactatgatcttaaactggctacctcaaaatcagAGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG
                 atctaac  putative branch site (score: 2)
                                        ctacctc  putative PPT
          ttttgatat  TA-rich tract