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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatcctaatgtgtgtgttgttatatcatttttttgaatattctattctatttatttgggtttctaaccagttttttctcaaaatgtgtagGACGGCCAAGTACCGTGAACCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGAT

Basic information

species Arabidopsis thaliana
transcript AT1G22015.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22015.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 3'ss of exon 8
gtaataatcctaatgtgtgtgttgttatatcatttttttgaatattctattctatttatttgggtttctaaccagttttttctcaaaatgtgtagGACGGCCAAGTACCGTGAACCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGAT
    |||   |||      | |  | | ||  ||   ||  |  |     |  |  ||  ||  |   | | | |  |  | |||     |  ||||  |  ||||||| |||||| ||||  ||||||||||| || ||||| |||||||| ||||| |||||||| || ||||| || || || ||||| || 
---gtaacgttaactcccctatcttgaaat--ttaaatttgacttgtagcttgaagtaaatgtctgcttgaactggctcctttca-----tacagGAATGTGAAGTACCATGAACCTGAGTACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTACTGGGCAGATATACGCGATTTCAAAAGAC

upper sequence: AT1G22015.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G013079_T01 (Zea mays), 3'ss of exon 8
----gtaataatcctaatgtgtgtgttgttatat-catttttttgaatattctatt---ctatttatttgggtttctaaccagttttttctcaaaatgtgtagGACGGCCAAGTACCGTGAACCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGAT
      | ||||  |  | | |    ||||| |  |||   ||   | | |  |||    |||| |||  ||  |    |  |    ||||| |    | |||||  |  ||||||| |||||| ||||  ||||||||||| || ||||| || ||||| ||||| ||||| ||||| ||||| |||||||| || || |||
atgacaagtaatgtttgtttctacactgttacaaacatgagttcagacactagattgaagtattaattgaggcct---gcttgaaccttctctattcatatagGAATGTTAAGTACCATGAACCTGAGTACTGGAAATTTGGGGAGGAAGGAAATAAATACTTCCGTCATGCCACGGGGCAGATATATGCCATTTCGAAAGAT

upper sequence: AT1G22015.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G070708_T02 (Zea mays), 3'ss of exon 8
gtaataatcctaatgtgtgtgttgttatatcatttttttgaatattctattctatttatttgggtttctaaccagttttttctcaaaatgtgtagGACGGCCAAGTACCGTGAACCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGAT
    ||||  | |  | |    ||||| | |||   ||  |    |  |||  ||  |     | ||  | |   | | |||        | |||||  |  ||||||| |||||| ||||  ||||||||||| || ||||| || || || ||||| |||||||| || ||||| |||||||| || || |||
---gtaatgtttacttctacactgttacaacatgaattcaagcgctagatttgatagaggcctgcttgaacctgctctattc-------atatagGAATGTGAAGTACCATGAACCTGAGTACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattctattctatttatttgggtttctaaccagttttttctcaaaatgtgtagGACGGCCAAGTACCGTGAACCCGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGAT
                         ttctaac  putative branch site (score: 1)
     tctattctatttattt  TA-rich tract