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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggttttttggtatttggaacatacgttttctttttctttattttttgtttggtgaatcagacactaatagatatcctctcttggctcagTTGAAAGTTAGTGACACCTCAACAGCAAAGTCAGGGTCTGAATTGGAAGAGATGGCTTCACCGAAAACAAATACGAACAATCATGTACCCAAGTTAACTC

Basic information

species Arabidopsis thaliana
transcript AT1G19650.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088306|gb|DR384065.1|DR384065
EST:     TCCTAAGCAGTGATTCCCAAATATCTTCATCGGATAAGCCAACTTATTCG                         TTGAAAGTTAGTGACACCTCAACAGCAGAGTCAGGGTCTGAATTGGAAGAG
genomic: TCCTAAGCAGTGATTCCCAAATATCTTCATCGGATAAGCCAACTTATTCGgtaaggtttt ... cttggctcagTTGAAAGTTAGTGACACCTCAACAGCAAAGTCAGGGTCTGAATTGGAAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttattttttgtttggtgaatcagacactaatagatatcctctcttggctcagTTGAAAGTTAGTGACACCTCAACAGCAAAGTCAGGGTCTGAATTGGAAGAGATGGCTTCACCGAAAACAAATACGAACAATCATGTACCCAAGTTAACTC
                           cactaat  putative branch site (score: 2)
                                       tcctctcttggctc  putative PPT
     attttttgttt  TA-rich tract