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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacacagacttaacattgccatagaaaccagaattatttggtgtttaattaatcacccgagtgacattttctttgttttggttttatagTGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGT

Basic information

species Arabidopsis thaliana
transcript AT1G17920.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17920.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 8
gtactacacagacttaacattgccatagaaaccagaattatttggtgtt-taa--ttaatcacccgagtgacattttctttgttttggttttatagTGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGT
          |   | ||||    |    ||   |  |||| || |||| | |  |||   ||     | ||||| | |||  ||||| ||   ||||||| |||||||| ||||| ||  |||| ||||| |||||||||||  |||| || ||| | ||||| |||||||||||||| ||||| 
----------gttgtgacatgtttaactcaatt-gtcttatctgatgttgtcaccttagatacgtttttaacattgtttttcgtttggctt---agTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGA

upper sequence: AT1G17920.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 8
gtactacacagacttaacattgccatagaaaccagaattatttggtgtt-taa--ttaatcacccgagtgacattttctttgttttggttttatagTGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGT
          |   | ||||    |    ||   |  |||| || |||| | |  |||   ||     | ||| | ||||   ||||| ||   ||||||| |||||||| ||||| ||  |||| ||||| |||||||||||  |||| ||  || | ||||| |||||||||||||| ||||| 
----------gttgtgacatgtttaactcaatt-gtcttatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggctt---agTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttggtgtttaattaatcacccgagtgacattttctttgttttggttttatagTGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGT
            aattaat  putative branch site (score: 3)
                                ttttctttgttttg  putative PPT
       tgtttaattaatca  TA-rich tract