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gtatgttcgttatctttgtttatgatgatgatatcattttgacgcattactatatcaaatgggaaaatgaatctgtctccaaagtttcttttgtctttcttctcattgtcgtcatgttcttctggtagGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAGCTGAAGAAACAACTTGAAGATGCTAGGTCAAAGGGCATCACTGTGAGAG
species | Arabidopsis thaliana |
transcript | AT1G17290.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTTCAATTGCCCTTCACGGTGGAACTTTG GTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAGEST: gi|116451787|gb|EG494379.1|EG494379
genomic: GCTTCAATTGCCCTTCACGGTGGAACTTTGgtatgttcgt ... cttctggtagGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAG
EST: CTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTG GTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAGEST: gi|124966400|gb|EL040508.1|EL040508
genomic: CTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTGgtatgttcgt ... cttctggtagGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAG
EST: CTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTG GTTCCATACTACCTTGATGAAGCAEST: gi|116471643|gb|EG514235.1|EG514235
genomic: CTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTGgtatgttcgt ... cttctggtagGTTCCATACTACCTTGATGAAGCA
EST: CTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTG GTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAGEST: gi|125273077|gb|EL287162.1|EL287162
genomic: CTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTGgtatgttcgt ... cttctggtagGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAG
EST: CTTCAATTGCCCTTCACGGTGGAACTTTG GTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAG
genomic: CTTCAATTGCCCTTCACGGTGGAACTTTGgtatgttcgt ... cttctggtagGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAG
tgtctccaaagtttcttttgtctttcttctcattgtcgtcatgttcttctggtagGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAGCTGAAGAAACAACTTGAAGATGCTAGGTCAAAGGGCATCACTGTGAGAG
tgttcttct CT-rich tract
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcgttatctttgtttatgatgatgatatcattttgacgcattactatatcaaatgggaaaatgaatctgtctccaaagtttcttttgtctttcttctcattgtcgtcatgttcttctggtagGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAGCTGAAGAAACAACTTGAAGATGCTAGGTCAAAGGGCATCACTGTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG