1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgtgttttggttgggtttgagttttactttgaaggattttcagaaaacatgaggttatagtcagcttattttctttcccatctcggtttcggttctggtgtcttctggcctggaattggtaaaatcggatgggacacgacttgttcttatcttactcataaattaatggtttaaacgcagGTGGGATAGTGAACAACACACTGAGGCCGACCATACCGAGCTACTGTGACTCGGACTGGCGAATATTAATGGAGGAGTGTTGGGCGCCTAACCCAACAGC
species | Arabidopsis thaliana |
transcript | AT1G16270.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTAACCGGCGAGGAACCATATGCTAATATGCACTACGGTGCTATAATAG GTGGGATAGTGAACAACACACTGAGGCCGACCATACCGAGCTACTGTGACT
genomic: TCTAACCGGCGAGGAACCATATGCTAATATGCACTACGGTGCTATAATAGgtgtgtgttt ... ttaaacgcagGTGGGATAGTGAACAACACACTGAGGCCGACCATACCGAGCTACTGTGACT
cggatgggacacgacttgttcttatcttactcataaattaatggtttaaacgcagGTGGGATAGTGAACAACACACTGAGGCCGACCATACCGAGCTACTGTGACTCGGACTGGCGAATATTAATGGAGGAGTGTTGGGCGCCTAACCCAACAGC
aattaat putative branch site (score: 3)
ttatcttactcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgttttggttgggtttgagttttactttgaaggattttcagaaaacatgaggttatagtcagcttattttctttcccatctcggtttcggttctggtgtcttctggcctggaattggtaaaatcggatgggacacgacttgttcttatcttactcataaattaatggtttaaacgcagGTGGGATAGTGAACAACACACTGAGGCCGACCATACCGAGCTACTGTGACTCGGACTGGCGAATATTAATGGAGGAGTGTTGGGCGCCTAACCCAACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG