1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgctacttacgaactaaatactctgccttgggaacaagttcatgactgttcttacaaaaacatgtgctgggatttaaacagGTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTGGTTTTGGGAAGAGGGTTCTTCTAGTTTCAAGTACGAAGTGAAAAGCTC
species | Arabidopsis thaliana |
transcript | AT1G16020.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAG GTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTEST: gi|86082561|gb|DR378320.1|DR378320
genomic: CTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGgtattgctac ... atttaaacagGTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCT
EST: AGCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAG GTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTEST: gi|19740892|gb|AU226245.1|AU226245
genomic: AGCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGgtattgctac ... atttaaacagGTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCT
EST: AGCGACACTCTTCTTGATACCACAGACCCTGTTGGAAGATTCAGCAACAG GTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCT
genomic: AGCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGgtattgctac ... atttaaacagGTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCT
cttgggaacaagttcatgactgttcttacaaaaacatgtgctgggatttaaacagGTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTGGTTTTGGGAAGAGGGTTCTTCTAGTTTCAAGTACGAAGTGAAAAGCTC
ttcttac putative branch site (score: 2)
ttacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgctacttacgaactaaatactctgccttgggaacaagttcatgactgttcttacaaaaacatgtgctgggatttaaacagGTATTGCAGCGGAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTGGTTTTGGGAAGAGGGTTCTTCTAGTTTCAAGTACGAAGTGAAAAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG