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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaatcacctaacatacatacattttcatggacgttatgtgagtctttaagttccctgttctcatttacagGAAGCTTGTCGGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCATTTCTCATCAATGTCTCTGTGATATCAGTGAGTGGTGCAGTTTGTAATG

Basic information

species Arabidopsis thaliana
transcript AT1G15960.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------gtaactaatcacctaacatacatacattttcatggacgttatgtgagtctttaagttccctgttctcatttacagGAAGCTTGTCGGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCATTTCTCATCAATGTCTCTGTGATATCAGTGAGTGGTGCAGTTTGTAATG
                                |  |    ||| | |     | ||| |   || |  || |   | |    |  | ||  ||  ||||||||| |||||  | | |||  |||||||||| || || || |||||||||||||||||||| ||||||||||| ||||  || || ||||||||||| | | 
tcttggttcctaaatgtttgcttcttaaactttggttttataataaaggcttagtttaacatac-tagtgagcagcgtctgatgacatgc-cttgtttacagGAGGCTTGCAGATTTTATATGATAGAAAGTGGCTTTGCTCTTATGGTGGCATTTCTCATTAATGTCTCTGTTATATGTGTAAGCGGTGCAGTTTGCAGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacattttcatggacgttatgtgagtctttaagttccctgttctcatttacagGAAGCTTGTCGGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCATTTCTCATCAATGTCTCTGTGATATCAGTGAGTGGTGCAGTTTGTAATG
                                   ttccctgttctcattt  CT-rich tract
     attttcat  TA-rich tract