Sequence
atgc intronic sequence ATGC exonic sequencegtgcgtatcatttcttgcatcaaacattgaagttaagacttcggtttggattgatacatcggtttttaacttttttcaatcttggctattagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G13770.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 3'ss of exon 8
gtgcgtatcatttcttgcatcaaa--cattgaagttaagacttcggtttggattgatacatcggtttttaacttttttcaatcttggctattagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAG
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gtaagcggatttacatg-atgaatttcataaccttttaaattttcttttaaaatgtttgttcgttaactaa-ttatttgactatctgta--tagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCGTTAACCCAGCATTTTGCACTTGCCAATAATGCAGCTGATATATCTGCAAAG
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM5G846548_T01 (Zea mays), 3'ss of exon 8
gtgcgtatcatttcttgcatcaaacatt-gaagttaagacttcggtttggattgatacatcggtttttaacttttttcaatcttggctattagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAG
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----gtaagtttttgaattttagaagtcagaactcatgttgatgaacttcctgaggttattgggggctaatttattgt--ttctatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G13010.1 (Glycine max), 3'ss of exon 4
gtgcgtatcatttcttgcatcaaacattgaagttaagacttcggtt-tggattgatacatcggtttttaacttttttcaatc-----ttggctat----tagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAG
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--ttaaggcattttttttcttatatttcctgattgatagtttatttgtgtactaatttttttttgtttatattttctctatcaaaatatgattatgaactagCTGGTGTTGCAAGTGGAGCCACTAGAGCAGCTTTGACTCAGCATTTTGCTCTTCAGGATAATGCTGCAGATATATCTGCAAAG
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA01G07190.2 (Glycine max), 3'ss of exon 8
gtgcgtatcatttcttgcatcaaacattgaagttaagacttcggtt-tggattgataca---tcggtttttaacttttttcaatcttggctat----tagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAG
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attaagacttttttttttcttttatttcctgattgatattttatttgtgtactgattttttttccttttttctctctatcaaaatatgattatgaactagCTGGTGTTGCAAGTGGTGCCACTAGAGCAGCTTTGACTCAGCATTTTGCTCTTCAGGATAATGCTGCAGATATATCTGCAAAG
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 8
----gtgcgtatcatttcttgcatcaaacattgaagttaagacttcggtttggattgatacatcggtttttaact----tttttcaatcttggctattagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAG
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tattgtcagtggaattgaaaatacttctgctgaataagaataatgcacattgtgttgatatttctcatcaaaaatctaattttacactcttcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19876024|gb|AU236855.1|AU236855EST: ATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTA CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTC
genomic: ATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTAgtgcgtatca ... tggctattagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttcggtttggattgatacatcggtttttaacttttttcaatcttggctattagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAG
ttttaac putative branch site (score: 2)
cttttttcaatctt CT-rich tract
tttttaacttttttca TA-rich tract