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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttgctgagtttctcttttctttgttcacttacgttcaatgtgctcatgtgtttccttgcaaagttcagGTTAATAACAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAACAATGAGTGGCTCTGATGTTTTTGTTTTGATGC

Basic information

species Arabidopsis thaliana
transcript AT1G10930.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10930.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os04g35420.1 (Oryza sativa), 3'ss of exon 7
gtgatttgct--gagtttctcttttctttgttcactta-cgttcaat-gtgctcatgtgtttccttgcaaagt--tcagGTTAATAACAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAACAATGAGTGGCTCTGATGTTTTTGTTTTGATGC
|| |||| ||   |  |   || |  ||  ||||   | | ||   | |||   |||  ||  |||||    |  |||||  || ||||||| ||| |||||||| | ||| ||||| || || ||  ||||||| ||||| || |||||||||||   ||||||||||||||||||||
gttattttcttcaaaatcaactgtaattatttcaaacatcatttgtttgtgagaatgacttgtcttgctgcctcatcagGCCAACAACAAAAGAGTATTTGGAAACCGTTCTTTTCGCCCAAATCAACGAGAAATAATCAACGCCACAATGAGTGGGAATGATGTTTTTGTTTTGATGC

upper sequence: AT1G10930.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G319573_T03 (Zea mays), 3'ss of exon 6
gtgatttgctg-agtttc-tcttttctttgttcac-------ttacgttcaatgtgctcatgtgtttccttgcaaagttcagGTTAATAACAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAACAATGAGTGGCTCTGATGTTTTTGTTTTGATGC
|| |||| ||  ||  || | ||||  || || ||        |   ||     | ||  |    ||   |||| | | ||||  || |||| |||   ||||||||| ||||| || || || |||||  ||||||| |||||||| |||||||||||   ||||||||||||||||||||
gttattttcttcagcatcattttttaattatttacgccatcactgatttttgaatactattaacctttagtgcata-tccagGCCAAGAACAGAAATAAGTTTGGAAACCATTCTTTCCGCCCCAACCAACGAGAAATAATCAATGCCACAATGAGTGGGCATGATGTTTTTGTTTTGATGC

upper sequence: AT1G10930.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 10
gtgatttgctgagtttctcttttctttgttcacttacgttcaatgtgctcatgtgtttccttgcaaagttcagGTTAATAACAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAACAATGAGTGGCTCTGATGTTTTTGTTTTGATGC
||  ||  |||| ||  | |    ||        |       || |    |  | ||||||| |    || |||||||||| |||||||| ||||||||||| || ||||| || || || ||||| || || |||||  |||||||||| | ||||||||||||| ||||||
gtatttaactgaattattgtcagtttccagtgaatgtaactcatctttataactttttccttact---tttagGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGTGATGTTTTTGTTCTGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttctttgttcacttacgttcaatgtgctcatgtgtttccttgcaaagttcagGTTAATAACAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAACAATGAGTGGCTCTGATGTTTTTGTTTTGATGC
            cacttac  putative branch site (score: 2)
                                     tttccttgc  putative PPT