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gtgacttctaagtaccgactgggatacttgcattatatgtctcgtgttatagctttgtaataatttctgcttctgtttgactagGTACGTGCAACATCACGTGTTTTCAGCTGATAAGACTGCTGCTAATTGTCATTTCTTCAATACGTTTTTCTACAAGAAGCTCACAGAAGCTGTTTCATAC
species | Arabidopsis thaliana |
transcript | AT1G10570.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATAAATTTCTACATCAG GTACGTGCAACATCACGTGTTTTCAGCTGATAAGACTGCTGCTAATTGEST: gi|164158044|gb|ES203471.1|ES203471
genomic: TATAAATTTCTACATCAGgtgacttcta ... gtttgactagGTACGTGCAACATCACGTGTTTTCAGCTGATAAGACTGCTGCTAATTG
EST: CTTTCACCTGGGGAATATCTTACATCGCCAGTTATAAATTTCTACATCAG GTACGTGCAACATCACGTGTTTTCAGC
genomic: CTTTCACCTGGGGAATATCTTACATCGCCAGTTATAAATTTCTACATCAGgtgacttcta ... gtttgactagGTACGTGCAACATCACGTGTTTTCAGC
gcattatatgtctcgtgttatagctttgtaataatttctgcttctgtttgactagGTACGTGCAACATCACGTGTTTTCAGCTGATAAGACTGCTGCTAATTGTCATTTCTTCAATACGTTTTTCTACAAGAAGCTCACAGAAGCTGTTTCATAC
tttctgcttctgttt CT-rich tract
tttgtaataatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacttctaagtaccgactgggatacttgcattatatgtctcgtgttatagctttgtaataatttctgcttctgtttgactagGTACGTGCAACATCACGTGTTTTCAGCTGATAAGACTGCTGCTAATTGTCATTTCTTCAATACGTTTTTCTACAAGAAGCTCACAGAAGCTGTTTCATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT