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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttctaccttttcctgatgtttgcctgtgcgtaatgatgaatttgttttcatacttttccaagttaaagctttaaagatggtctcataatcattggcagATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGGTTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCGTAGTATGAGTCTAGTCTT

Basic information

species Arabidopsis thaliana
transcript AT1G09130.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09130.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 8
tcttctaccttttcctgatgtttgcctgtgcgtaatgatgaatttgttttcatacttttccaagttaaagctttaaagatggtctcataatcattggcagATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGGTTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCGTAGTATGAGTCTAGTCTT
     ||  |  |||| |    |        ||| |  |     ||| || |   ||  || || ||| ||      |||| |||     |       |||||||||||||||||||||||||||| || || || ||  || |  | |||||||  ||||||||||| || ||| ||   || |   |  | ||   ||
----gtaagtgctcctcaatactatgctcttgtagttcttt-catgtattgacttttgaccgagctaatgc------gatgttcttggggtt-----tagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcatacttttccaagttaaagctttaaagatggtctcataatcattggcagATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGGTTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCGTAGTATGAGTCTAGTCTT
                          tttaaagat  TA-rich tract