1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatctagcaatattggttcttgactcgtcgcgtttcatgtctttcttacataagtccacacagagattctgaaactggaattgtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGACAGACTTCATGAACTTCAGGTTGCAGATTACATTTAAAAAAAAGAACCAG
species | Arabidopsis thaliana |
transcript | AT1G07010.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAG GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGACEST: gi|125154760|gb|EL185220.1|EL185220
genomic: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
EST: TGGTGTTCTTGACTCTAGACCAGAG GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGACEST: gi|116461227|gb|EG503819.1|EG503819
genomic: TGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
EST: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAG GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGACEST: gi|116396060|gb|EG438652.1|EG438652
genomic: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
EST: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAG GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
genomic: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
tgtctttcttacataagtccacacagagattctgaaactggaattgtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGACAGACTTCATGAACTTCAGGTTGCAGATTACATTTAAAAAAAAGAACCAG
ttcttac putative branch site (score: 2)
ttgtttcttc putative PPT
ttacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctagcaatattggttcttgactcgtcgcgtttcatgtctttcttacataagtccacacagagattctgaaactggaattgtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGACAGACTTCATGAACTTCAGGTTGCAGATTACATTTAAAAAAAAGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC