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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaccaatacattatacttattgttatgtgagaaagctcctatgagtcatactgaagtttttttttcctattatttctaagGAATGTCGAGAAGCTGTCGGAGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACA

Basic information

species Arabidopsis thaliana
transcript AT1G06290.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06290.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 3'ss of exon 8
gtgagaaccaatacattatacttattgttatgtgagaaagctcctatgagtcatactgaagtttttttt----tcctattatttctaagGAATGTCGAGAAGCTGTCGGAGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACA
              | ||  || | | ||| || |   |  | ||||   ||     |  ||  |   |    | |    || | | |||||||||| ||||||   || ||||||||  |||| || |||||||   |||| ||  |||||||||||| |||||||||  | ||||||||||||||||
-----------gttaataacctcaattttacgtaaaggaattgctatatttccagtaggtgtcctcactgaagttcagccatgtgtcagGAATGTCGTGAAGCTTGTGGGGGGCAAGGCTTGAAGACTGAAAATCGGATTGGGCAAATGAAAGGTGAATATGATGTGCAATCCACATTTGAGGGTGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgagaaagctcctatgagtcatactgaagtttttttttcctattatttctaagGAATGTCGAGAAGCTGTCGGAGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACA
                               tttttttttcctatta  CT-rich tract
                               tttttttttcctatta  TA-rich tract