Sequence
atgc intronic sequence ATGC exonic sequencegtaaagcatcttccagtttcctccttcatatcaattttgtattcttgttaagtcatctttgttttatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G05170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 3'ss of exon 8
gtaaag--catcttccagtttcctccttcatatcaattttgtattcttgttaagt-catctttgttttatggag-cagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC
|||| ||| || || || | | | ||| || || | | |||||||| | ||| || || || ||||||||||| ||||||||||| || || ||| |||||||| |||||||||||||| || || |||||||| || || || | |||
gtaagtcccatgttgttgtcatgtcttccttgatgttttaaacagctgaccaaataccaatttgttttttattctcagGGGTGTAAGATACCATGAGCCCGAGTACTGGAAATTCGGCGAATGGGGGAACAAGTACTTCCGTCATGCAACCGGCCAGTTATATGCAATCTCCAAGGAT
upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA06G46230.2 (Glycine max), 3'ss of exon 8
----gtaaagcatcttccagtttcctccttcat------atcaa----ttttgtattcttgtt--aagtcatctttgttttatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC
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gtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGAT
upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G38500.1 (Glycine max), 3'ss of exon 8
--gtaaagcatcttccagtttcctc------cttcata------tcaat--tttgtattcttgttaagtcatctttgttttatgga---------gcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC
| || || ||| | |||| ||||| |||| | |||| | | | | || || || ||| |||||||||| ||||||||||| ||||| |||||||| ||||| || ||| ||||| |||||||| || || ||||||||||| || |||||||||| ||
gtgagaataattttcttttatccttgtgctatttcatgaaagggtcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGAT
upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G10520.1 (Glycine max), 3'ss of exon 8
----gtaaagcatcttccagtttcctcct--tcatatcaattttgtattct----tgttaagtcatctttg-----ttttatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC
| || || | || |||| | || | | | | | | ||| || || | | || |||||||||| ||||||||||| || ||||||||||| ||||| || ||| |||| |||||||||||||| || || ||||| || |||||||| | ||
gtgagaaatgcttatttttgtttttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaaatactttgttgcagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAATTTGGAGAGGCTGGAAACAGGTACTTCCGTCATGCCACAGGGCAGTTGTATGCCATTTCGAATGAT
upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G31980.1 (Glycine max), 3'ss of exon 8
------------gtaaagcatcttccagtttcctcct-------tcatatcaattttgtattcttgttaa-gtcatctttgttt-----tatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC
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gtgagaatcatattcttgtatccttgtgctatttcatgaaagggtcataaatatgtagtgttttcatttctagcttcttagtttgccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCCGGAAACAAGTACTTCCGCCACGCCACAGGACAGTTGTATGCCATTTCAAAAGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124724228|gb|EH815630.1|EH815630EST: CCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA AGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGT
genomic: CCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgtaaagcatc ... tatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctccttcatatcaattttgtattcttgttaagtcatctttgttttatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC
tctttgtttt CT-rich tract
atatcaattttgtatt TA-rich tract