1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtttttagtgaattccagatgtaaatggaaaaaagttggtaacttttgagcaacttttgagctaagaaaaattcattgaaatgtgtgtggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAGGCTGATTCTTCTCAAAGGCCCGCTGGGAAACTGCGTGTTCACTGGAGATTATGATCGGGAAGCGTTGG
species | Arabidopsis thaliana |
transcript | AT5G66120.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGEST: gi|116421960|gb|EG464552.1|EG464552
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTG
EST: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGGCAGATGGACTGCTGAGEST: gi|116421951|gb|EG464543.1|EG464543
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGGCAGATGGACTGCTGAGEST: gi|116421921|gb|EG464513.1|EG464513
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGGCAGATGGACTGCTGAGEST: gi|116472854|gb|EG515446.1|EG515446
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGGCAGATGGACTGCTGAGGCTGATTTTTCTCAAAGGCEST: gi|125244220|gb|EL258305.1|EL258305
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAGGCTGATTCTTCTCAAAGGC
EST: CAACNCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGGEST: gi|116421976|gb|EG464568.1|EG464568
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGG
EST: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGGCAGATGGACTGCTGAGEST: gi|116421964|gb|EG464556.1|EG464556
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG GTGGACAAGAAAGTGGCAGATGGACTGCTGAG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
ttttgagcaacttttgagctaagaaaaattcattgaaatgtgtgtggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAGGCTGATTCTTCTCAAAGGCCCGCTGGGAAACTGCGTGTTCACTGGAGATTATGATCGGGAAGCGTTGG
aaaaattcattgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttttagtgaattccagatgtaaatggaaaaaagttggtaacttttgagcaacttttgagctaagaaaaattcattgaaatgtgtgtggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAGGCTGATTCTTCTCAAAGGCCCGCTGGGAAACTGCGTGTTCACTGGAGATTATGATCGGGAAGCGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT