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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggaaaccttaatctctcacgctctcatatccaaacacacacaatccttgtgctctaaagctcaattatgatccaatttcttgcagGTCATTTGATGTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCAGTTGCAGTCAAAACCAGCAACAAATAGAGTTAGACAAACCATCATCCTAATTAG

Basic information

species Arabidopsis thaliana
transcript AT5G65740.4
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799710|gb|AU231000.1|AU231000
EST:     TAGCCTCTGCCTCACAGAGCTGGTTAAGGGTCTATCACAACAACAAGACA                         GTCATTTGATGTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCAGGTTC
genomic: TAGCCTCTGCCTCACAGA-CTGGTTAA-GGTCTATCACAACAACAAGACAgtaagtggaa ... tttcttgcagGTCATTTGATGTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCA-GTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacacacacaatccttgtgctctaaagctcaattatgatccaatttcttgcagGTCATTTGATGTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCAGTTGCAGTCAAAACCAGCAACAAATAGAGTTAGACAAACCATCATCCTAATTAG
                     ctctaaa  putative branch site (score: 3)
                                             tttcttgc  putative PPT
                                aattatgat  TA-rich tract