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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtaaattttaacatatggaggcaaacagttttatcatatgtaccaggaagaaaattagtctttcctgaaagtcgctctttttttgttttgctttacacagAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCTCCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAG

Basic information

species Arabidopsis thaliana
transcript AT5G64860.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA04G39730.1 (Glycine max), 3'ss of exon 6
gcaagtaaattttaacatatggaggcaaa---cagttttatcatatgtaccaggaagaaaat-tagtctttcctgaaagtcgctctttttttgttttgctttacacagAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCTCCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAG
|  ||||  |  |||   |||      ||      | | |   |   |        ||  || | ||   |  |||   |       | | | |||  ||     ||||||| ||| |||||||||||| | ||||| |||||||||||||||   ||||||||||||||||| || ||||||||
gttagtagttcctaaagaatgtctctgaagtgtgatctgacttttctttttttttggagcatattgtaccttttgatcataaaataatatctatttatctg---gcagAACAGGAAGGGCTTTCCTCTTTTAGTTAGTGGTGTTCCTCCTGACGCATTCAGTGAAACTGGTCAGCTTTGGGGCAG

upper sequence: AT5G64860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G15140.1 (Glycine max), 3'ss of exon 6
gcaagtaaattttaacatatgg---aggcaaacagttttatcatatgtaccaggaagaaaattagtctttcctgaaagtcgctctttttttgttttgctttacacagAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCTCCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAG
|  || |  |  |||   |||    ||        | | | |   | |     | || | ||| ||   |  |||   |       | | | |||  ||     ||||||| ||| |||||||||||| | ||||| |||||||||||||||   ||||||||||| || || || ||||||||
gttagcagttcctaaagaatgtctcagaagtgtgatctaacctgttcttttttggagcatatt-gtaccttttgatcataaaataatctctatttatctg---gcagAACAGGAAGGGCTTTCCTCTTTTAGTTAGTGGTGTTCCTCCTGACGCATTCAGTGAAACCGGCCAGCTCTGGGGCAG

upper sequence: AT5G64860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 7
gcaagtaaattttaacatatggaggcaaacagttttatcatatgtaccaggaagaaaattagtctttcctgaaagtcgctctttttttgttttgctttacacagAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCTCCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAG
|  ||||  | |   ||| |      ||  | | |||    ||   | ||  |  |  ||   |  | ||||      ||      || |     | |   ||||||||||  || ||||||||||| ||||| ||||||||||| ||    || ||||||||||| || |||||||||||
gttagtagttctcttcat-taactttaagaaatctta----ataatctagtcatgacctt---ccattctgagttctactgacaaattatccctttgttggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaagaaaattagtctttcctgaaagtcgctctttttttgttttgctttacacagAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCTCCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAG
                          tcgctctttttttgtt  CT-rich tract
                              tctttttttgtttt  TA-rich tract