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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtttctcaaacatttcatttatgatccaagtattagacagaactgttttcacccatctattggatcacataatttatgatctctgaatgttgcagCTTGTGTAAGTCCCGCTGATACAAATGCTGAGGAAACTTTAAATACGCTCAAATACGCAAATCGTGCTCGCAATATTCAAAACAAAGCAGTG

Basic information

species Arabidopsis thaliana
transcript AT5G60930.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60930.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G026560_T01 (Zea mays), 3'ss of exon 8
gtatggtttctcaaacatttcatttatgatccaagtattagacagaactgttttcacccatctattg-gatcacataatttatgatctctgaatgtt-----gcagCTTGTGTAAGTCCCGCTGATACAAATGCTGAGGAAACTTTAAATACGCTCAAATACGCAAATCGTGCTCGCAATATTCAAAACAAAGCAGTG--------
                          |    | | | ||  | | |  | |  |   ||   | ||| |  ||| ||| | ||| | |   | | ||     ||||| ||  | || || ||||||| |||||| || |||||  |||| || |||||||| || ||||| || ||||| ||||||||||||||||||        
-------------------------gtaggtctactttttcagacatatatcctagtcctggtgttgagggcacttaaatcatgctttgctactcttttcatgcagCATGCATTAGCCCTGCTGATATAAATGCAGAAGAAACCATAAACACACTCAAATATGCCAATCGCGCACGCAACATTCAAAACAAAGCAGTGGTAAACCG

upper sequence: AT5G60930.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA04G10080.1 (Glycine max), 3'ss of exon 6
----gtatggtttctcaaacatttcatttatgatccaagtattagacagaactg--ttttcacccatctattggatcacataatttatgatctctgaatgttgcagCTTGTGTAAGTCCCGCTGATACAAATGCTGAGGAAACTTTAAATACGCTCAAATACGCAAATCGTGCTCGCAATATTCAAAACAAAGCAGTG
     | || |       |||        |||||   ||| | ||| |    ||  |||||     ||   || ||||  |||  | | |      ||||||||||| ||||| ||||| ||||| ||||||||||| || || || || ||  | || || ||||| |||||||| || ||||| ||||| ||||| 
aaaactgtgatgataggtacaaact-caaatgatgagagt-tcagatatttttgtgttttctatagtcacatgcatcatctaacctgtcag----aaatgttgcagCATGTGTTAGTCCTGCTGACACAAATGCTGAAGAGACATTGAACACTTTAAAGTATGCAAACCGTGCTCGTAACATTCAGAACAAGGCAGTT

upper sequence: AT5G60930.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 6
----------gtatggtttc-tcaaacatttcatttatgatcca----agtattagacagaactgttttcacccatctattggatcacataatttatgatc------tctgaatgt-----tgcagCTTGTGTAAGTCCCGCTGATACAAATGCTGAGGAAACTTTAAATACGCTCAAATACGCAAATCGTGCTCGCAATATTCAAAACAAAGCAGTG
            |||  ||| |||       | | ||| |  ||     | | ||   |   |   ||  |    ||| ||  || ||   |||| |  |       ||| |||||     | |||||||||| ||||| |||||||||||||| || || || ||||| ||  | || || |||||||||||||| |||||||| ||||| ||||| 
gtaagtacataaatgtcttcatcatgttcagcctgtataaaacattttggaactacttaaggcatcttatattgttctctttcatgactctatttttccttcctttttctaaatgtacaaatacagCTTGTGTTAGTCCTGCTGATACAAATGCAGAAGAGACCTTAAACACTTTGAAGTATGCAAATCGTGCTCGAAATATTCAGAACAAGGCAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgttttcacccatctattggatcacataatttatgatctctgaatgttgcagCTTGTGTAAGTCCCGCTGATACAAATGCTGAGGAAACTTTAAATACGCTCAAATACGCAAATCGTGCTCGCAATATTCAAAACAAAGCAGTG
                       atcacataatttat  TA-rich tract