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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttaaagtttctttcattcgtaaaaattattatttcgcggtgacatgtaaagattgttggttaaatttatacctttaaatttttaatctcctgcagATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAGACCCCATTCCTGAAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G60640.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124729282|gb|EH820684.1|EH820684
EST:     ACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAG                         ATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCA
genomic: ACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGgtatgtcttt ... tctcctgcagATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCA
EST: gi|125165477|gb|EL191743.1|EL191743
EST:     CAGATAAAATTAAG                         ATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCA
genomic: CAGATAAAATTAAGgtatgtcttt ... tctcctgcagATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCA
EST: gi|86064530|gb|DR360287.1|DR360287
EST:     ACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAG                         ATATTTGGGGA
genomic: ACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGgtatgtcttt ... tctcctgcagATATTTGGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatgtaaagattgttggttaaatttatacctttaaatttttaatctcctgcagATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAGACCCCATTCCTGAAAAG
                                       ttttaat  putative branch site (score: 3)
                                             tctcctgc  CT-rich tract
           attgttggttaaattt  TA-rich tract