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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattagattcttctctcattctcatttacttttcgatgatgattaattttggattgctcttctttttttaacatttttctctctgtttcatcttcactctgtgacagGTGAAAAAAGTGTTTCTAAGAGAAGTCTTGTACGATTGATTCTCAGATCCCTAGTCGAAAACCATACCTTATTACATAATCCCTTCTATAAAACTTTGAA

Basic information

species Arabidopsis thaliana
transcript AT5G58970.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124704653|gb|EH796055.1|EH796055
EST:     GAACCTGGAATGCCATTATGTTCCTCACATTAGAACAA                         GTGAAAAAAGTGTTTCTAAGAGAAGTCTTGTACGATTGATTCTCA
genomic: GAACCTGGAATGCCATTATGTTCCTCACATTAGAACAAgtaaattaga ... tctgtgacagGTGAAAAAAGTGTTTCTAAGAGAAGTCTTGTACGATTGATTCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgctcttctttttttaacatttttctctctgtttcatcttcactctgtgacagGTGAAAAAAGTGTTTCTAAGAGAAGTCTTGTACGATTGATTCTCAGATCCCTAGTCGAAAACCATACCTTATTACATAATCCCTTCTATAAAACTTTGAA
             ttttaac  putative branch site (score: 2)
                   catttttctctctgtt  CT-rich tract
     tcttctttttttaaca  TA-rich tract