1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtctactgcttctttttcttgtcctgtattcagtcttatgggagttattgcacaataatcttctttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATGACTGGGATGCTGCAACAGCTGCCAATTTCTTGAGGAAATATGGTCTTAT
species | Arabidopsis thaliana |
transcript | AT5G57655.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAG GCACGCTTTTAANCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTAEST: gi|164187066|gb|ES036346.1|ES036346
genomic: CAGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAGgtaagtctac ... tttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTA
EST: CAGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAG GCACGCTTTTAANCGAGCCCAAGCCTCAAGAACCCACCAAGCACCEST: gi|163981175|gb|ES205251.1|ES205251
genomic: CAGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAGgtaagtctac ... tttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACC
EST: TTTGAAGCTGCTGTTGCTTACAAGAAGAAGTATTGGTATTCAAAG GCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATEST: gi|86055232|gb|DR350989.1|DR350989
genomic: TTTGAAGCTGCTGTTGCTTACAAGAAGAAG-ATTGG-ATTCAAAGgtaagtctac ... tttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTAT
EST: CAGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAG GCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATGEST: gi|124705963|gb|EH797365.1|EH797365
genomic: CAGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAGgtaagtctac ... tttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATG
EST: AAGATTGGATTCAAAG GCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATGEST: gi|164139107|gb|ES032253.1|ES032253
genomic: AAGATTGGATTCAAAGgtaagtctac ... tttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATG
EST: AGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAG GCACGCTTTTAATCGAGCCCAAGCC
genomic: AGGTTCTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAGgtaagtctac ... tttttatcagGCACGCTTTTAATCGAGCCCAAGCC
ttgtcctgtattcagtcttatgggagttattgcacaataatcttctttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATGACTGGGATGCTGCAACAGCTGCCAATTTCTTGAGGAAATATGGTCTTAT
tcttctttttatc CT-rich tract
aataatcttcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctactgcttctttttcttgtcctgtattcagtcttatgggagttattgcacaataatcttctttttatcagGCACGCTTTTAATCGAGCCCAAGCCTCAAGAACCCACCAAGCACCAGTATGACTGGGATGCTGCAACAGCTGCCAATTTCTTGAGGAAATATGGTCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC