1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgctccatgttgcttaacttataacaacattctttgctttgctgcaagttatagtttagtttaagttaagattcactatcttctattaaaagtttattagctatgattcaccatcttcttttgaatccacttaaagaagagagttatcaaatttgattctttctttcacttctgtgttctaaagGTATATGTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCATAGAGTATGATGGAAAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGT
species | Arabidopsis thaliana |
transcript | AT5G57580.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTTACTGATAGCCAAAAG GTATATGTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCEST: gi|124850518|gb|EH934955.1|EH934955
genomic: CACTTACTGATAGCCAAAAGgtttgctcca ... tgttctaaagGTATATGTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTC
EST: TTTCTGGAGATCAATACTTCTCTGCTGATTCACTTACTGATAGCCAAAAG GTATATGTTGAGGGGCTGGT
genomic: TTTCTGGAGATCAATACTTCTCTGCTGATTCACTTACTGATAGCCAAAAGgtttgctcca ... tgttctaaagGTATATGTTGAGGGGCTGGT
cttaaagaagagagttatcaaatttgattctttctttcacttctgtgttctaaagGTATATGTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCATAGAGTATGATGGAAAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGT
atttgat putative branch site (score: 5)
ttctttctttcacttc CT-rich tract
ttatcaaatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctccatgttgcttaacttataacaacattctttgctttgctgcaagttatagtttagtttaagttaagattcactatcttctattaaaagtttattagctatgattcaccatcttcttttgaatccacttaaagaagagagttatcaaatttgattctttctttcacttctgtgttctaaagGTATATGTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCATAGAGTATGATGGAAAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC