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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttagttagatctgcacttgattcttttcagtgtagcttattgtctgagatatttcgcaacttatgctggcattttttctttttgcagGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGTTCCAG

Basic information

species Arabidopsis thaliana
transcript AT5G56280.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163987027|gb|ES028051.1|ES028051
EST:     TCAGAGAGATTTCAAGATAATTTCTTGATG                         GAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGT
genomic: TCAGAGAGATTTCAAGATAATTTCTTGATGgtgagttagt ... ctttttgcagGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGT
EST: gi|19876192|gb|AU237023.1|AU237023
EST:     GAAGATTGCCTGCCATGGAATCAGAGAGATTTCANGATAATTTCTTGATG                         GAGTACAACGACAA-TTACTAATA-CTTTCCTAGCCGATGATTACNAATTG
genomic: GAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATAATTTCTTGATGgtgagttagt ... ctttttgcagGAGTACAACGACAAATTACTAATAACTTACCTAGC-GATGATTACAAATTG
EST: gi|86085218|gb|DR380977.1|DR380977
EST:     GAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATAATTTCTTGATG                         GAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGT
genomic: GAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATAATTTCTTGATGgtgagttagt ... ctttttgcagGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGT
EST: gi|19742684|gb|AU228037.1|AU228037
EST:     GAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATAATTTCTTGATG                         GAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGT
genomic: GAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATAATTTCTTGATGgtgagttagt ... ctttttgcagGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcttattgtctgagatatttcgcaacttatgctggcattttttctttttgcagGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGTTCCAG
                                     cattttttctttttgc  CT-rich tract
 attttttcttttt  TA-rich tract