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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcatgaataagcttgcagatatggaccagttagggatcctgtacatattatacataaacaaagctgagttttccacatatttccagGCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTATGGTTCTACCAGGACTACCATCTAGTACACAAGTCTACTTCTCAAGTCCAGGAG

Basic information

species Arabidopsis thaliana
transcript AT5G52100.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52100.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os03g02570.1 (Oryza sativa), 3'ss of exon 6
---------------------------------------------------------------------------------------------gta-aagcatgaataagcttgcagatatggaccag-ttagggatcctgtaca-tattatacataaacaa-agctgagttttccacatatttccagGCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTATGGTTCTACCAGGACTACCATCTAGTACACAAGTCTACTTCTCAAGTCCAGGAG
                                                                                             ||| || |  |||| || || ||  | |  | ||| |||  | | |   | | | ||  ||| ||  ||  |   | | ||    | |     ||||||| |||||  || | |||||||| ||||| ||||| |||||||||||||||||||| ||  | || || |||  | || |||||||| | || ||||
gtaagttgtgagggaaatattttgcatcactatctatctaatgatacagaaacggatattgtagtctgttcagttcattataaaacagtgaaagtacaaactggaatcagttttcacctctataacagcttacagctgcacaatactgtttcacaaaactaatggacaaatgttttggaaa-----agGCAAGGGGTCAGATACTTGGAGAAGATGGGGTGCGTGTCCACAGTATGGTTCTACCAGGCCTTGCTTCCAGCACATCAATCAACTTCTCAGGCCCTGGAG

upper sequence: AT5G52100.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os03g02690.2 (Oryza sativa), 3'ss of exon 7
--------------------------------------------------------------------------------------------gta-aagcatgaataagcttgcagatatggaccagttagggatcctgtacatattatacataaacaaagctgagttttccacatatttcc----agGCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTATGGTTCTACCAGGACTACCATCTAGTACACAAGTCTACTTCTCAAGTCCAGGAG
                                                                                            ||| || |  |||| || || ||  | |  | ||| |          | || | |||   |  ||||| || |  |   || || |||      ||||||| |||||  || | |||||||| ||||| ||||| |||||||||||||||||||| ||  | || ||||||    || | |||||  | || ||||
gtaagtgtgagaaaaatattttgcattgctatttatctaatgatacagaaacgggcattgcaatctgttcagttcattctaaaacagtgaaagtacaaactggaatcagttttcacctctataacagcttacagc----tgcacaatattgtttcacaaaactaa--tggacaaatgttttggaaaagGCAAGGGGTCAGATACTTGGAGAAGATGGGGTGCGTGTCCACAGTATGGTTCTACCAGGCCTTGCTTCCAGTACATCGATCCATTTCTCGGGCCCTGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083449|gb|DR379208.1|DR379208
EST:     CAAATCTTGGTCAGATCTACAACAGAGAGGATAGTTCAACTGATGTTCAG                         GCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTATGGTT
genomic: CAAATCTTGGTCAGATCTACAACAGAGAGGATAGTTCAACTGATGTTCAGgtaaagcatg ... atatttccagGCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTATGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggatcctgtacatattatacataaacaaagctgagttttccacatatttccagGCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTATGGTTCTACCAGGACTACCATCTAGTACACAAGTCTACTTCTCAAGTCCAGGAG
                                              tatttcc  CT-rich tract
          tacatattatacataa  TA-rich tract