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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtagaccctcacctccactctaacttaaattctgtgatattgtttaaacttaatagtgaaacaatctctcttcttcttccttgagatacttatagttatatttttggtccatggaatgtagaaaagaaaaacaatcatgccttactgtttaaaataatattctttgcagATATGTGATCGATTTATCAACCGCAAACTCGTGCAAAAAGTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATT

Basic information

species Arabidopsis thaliana
transcript AT5G49950.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164196513|gb|ES101207.1|ES101207
EST:     GCTGTGTGTTCTCCTTGGGATCTATTG                         ATATGTGATCGATTTATCAACCGCAAACTCGTGCAAAAAGTAGTATGACAG
genomic: GCTGTGTGTTCTCCTTGGGATCTATTGgtcagtagac ... ttctttgcagATATGTGATCGATTTATCAACCGCAAACTCGTGCAAAAAGT-GTATGACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtagaaaagaaaaacaatcatgccttactgtttaaaataatattctttgcagATATGTGATCGATTTATCAACCGCAAACTCGTGCAAAAAGTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATT
                        gccttac  putative branch site (score: 3)
                                           tattcttt  putative PPT
                           ttactgtttaaaataa  TA-rich tract