Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctctcttcttttaccttgatcacaaaaccaaaaattccatgagaattccacatatgaaagtgttgatgtgtacaggagGTACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCAATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTC

Basic information

species Arabidopsis thaliana
transcript AT5G48830.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48830.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0005g06150.t01 (Vitis vinifera), 3'ss of exon 7
-------------------gtaaacctctcttcttttaccttgatcacaaa-accaaaaattccatg-agaattccacatatgaaagtgttgatgtgtacaggagGTACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCAATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTC
                    ||      |||||||  |   | | || ||| | | |   | ||||  |  | |    || |     | ||  ||| | |||||||||||||||||| ||||| || |||||||| |||||    |||||| | || ||||   | ||   |||||| |||   | | | || ||||||||    
tattttgacacatacttcaatagtttaatcttcttg-attgtaagcataaatagccagtttgccatttattacttattatctttggttttttgtgt-tgcagGAGGTACTACTTCAGCCTATTCCTTGAGTTATCTGACATTACTATGCCATTGATTAGAGCCATTTTTACTAAAGTCAGTGATGCCGTGTCATTCTTTCTA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaccaaaaattccatgagaattccacatatgaaagtgttgatgtgtacaggagGTACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCAATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTC
                                     tgttgat  putative branch site (score: 4)
      aaaaatt  TA-rich tract