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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctctcttcttttaccttgatcacaaaaccaaaaattccatgagaattccacatatgaaagtgttgatgtgtacaggagGTACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCAATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTC

Basic information

species Arabidopsis thaliana
transcript AT5G48830.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48830.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0005g06150.t01 (Vitis vinifera), 3'ss of exon 7
-------------------gtaaacctctcttcttttaccttgatcacaaa-accaaaaattccatg-agaattccacatatgaaagtgttgatgtgtacaggagGTACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCAATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTC
|| ||||||| | | | || ||| | | | | |||| | | | || | | || ||| | |||||||||||||||||| ||||| || |||||||| ||||| |||||| | || |||| | || |||||| ||| | | | || ||||||||
tattttgacacatacttcaatagtttaatcttcttg-attgtaagcataaatagccagtttgccatttattacttattatctttggttttttgtgt-tgcagGAGGTACTACTTCAGCCTATTCCTTGAGTTATCTGACATTACTATGCCATTGATTAGAGCCATTTTTACTAAAGTCAGTGATGCCGTGTCATTCTTTCTA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaccaaaaattccatgagaattccacatatgaaagtgttgatgtgtacaggagGTACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCAATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTC
                                     tgttgat  putative branch site (score: 4)
 aaaaatt  TA-rich tract