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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttccaacattcctcgatcccctatgttcaacagatgatagtaatagagaacattgaccacttttttatgtgatgtttaaatccaatcttgatagGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACATCTAGAATGG

Basic information

species Arabidopsis thaliana
transcript AT5G48470.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080901|gb|DR376658.1|DR376658
EST:     GAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAG                         GTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT
genomic: GAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAGgtatgtttcc ... atcttgatagGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT
EST: gi|86082449|gb|DR378208.1|DR378208
EST:     GAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAG                         GTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT
genomic: GAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAGgtatgtttcc ... atcttgatagGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT
EST: gi|86078170|gb|DR373927.1|DR373927
EST:     GAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAG                         GTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT
genomic: GAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAGgtatgtttcc ... atcttgatagGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT
EST: gi|125036856|gb|EL109125.1|EL109125
EST:     AAAACCGTTACCAGTAAGACCAGGAATGTTTCTTAGAAACTGTCACAAAG                         GTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT
genomic: AAAACCGTTACCAGTAAGACCAGGAATGTTTC-TAGAAACTGTCACAAAGgtatgtttcc ... atcttgatagGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatagagaacattgaccacttttttatgtgatgtttaaatccaatcttgatagGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACATCTAGAATGG
           cattgac  putative branch site (score: 3)
                     ttttttatgtgatgtt  TA-rich tract