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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagataatggtttcttccttctacaacaacttagttacatattctgtcgcggtcataatatcgaaactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTACA

Basic information

species Arabidopsis thaliana
transcript AT5G47900.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435426|gb|EG478018.1|EG478018
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: gi|116435436|gb|EG478028.1|EG478028
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         AATCTGAAGGTGAAATGTGGGGTACGAGGTCGCACTGGACCAGGCTGTAAT
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacaacaacttagttacatattctgtcgcggtcataatatcgaaactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTACA
               ttacatatt  TA-rich tract