1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttacttgttgtctattacaagtttgttttctgtcaaaagaaagactgttttatgaaactcgagtttttttttcttttcgtgaacagACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATGGAGCAATTTCGTTATCAAAAACCCATCTTTGCTTAAAATCATGACTC
species | Arabidopsis thaliana |
transcript | AT5G47100.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTTGATCAG ACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAAEST: gi|164197589|gb|ES135041.1|ES135041
genomic: AATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTTGATCAGgtttacttgt ... tcgtgaacagACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAA
EST: AGAGATGATACTTGATCAG ACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAA
genomic: AGAGATGATACTTGATCAGgtttacttgt ... tcgtgaacagACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAA
gtcaaaagaaagactgttttatgaaactcgagtttttttttcttttcgtgaacagACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATGGAGCAATTTCGTTATCAAAAACCCATCTTTGCTTAAAATCATGACTC
ctcgagtttttttttc CT-rich tract
agtttttttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacttgttgtctattacaagtttgttttctgtcaaaagaaagactgttttatgaaactcgagtttttttttcttttcgtgaacagACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATGGAGCAATTTCGTTATCAAAAACCCATCTTTGCTTAAAATCATGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA