1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccattagcataaacaaaatcctacattagatttttatgctaatcgtactgttgttttctttttgtgattgtataatctttatgatgcgattattgaacagATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTATCGGAGACAATGAGGTAGAACAGAGTATGTATGGACAACTTGTTCTTGGG
species | Arabidopsis thaliana |
transcript | AT5G45170.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCGGTTGCTATCGTAACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCT ATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTATEST: gi|124804961|gb|EH892446.1|EH892446
genomic: CCGGTTGCTATCGTAACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCTgtaagtactt ... tattgaacagATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTAT
EST: CAAGAGTGGAGACAAAGTAGCCCT ATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTAAEST: gi|125053633|gb|EL124648.1|EL124648
genomic: CAAGAGTGGAGACAAAGTAGCCCTgtaagtactt ... tattgaacagATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTA-
EST: CAAGAGTGGAGACAAAGTAGCCCT ATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTATEST: gi|116478590|gb|EG521182.1|EG521182
genomic: CAAGAGTGGAGACAAAGTAGCCCTgtaagtactt ... tattgaacagATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTAT
EST: CCGGTTGCTATCGTAACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCT ATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTAT
genomic: CCGGTTGCTATCGTAACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCTgtaagtactt ... tattgaacagATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTAT
tactgttgttttctttttgtgattgtataatctttatgatgcgattattgaacagATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTATCGGAGACAATGAGGTAGAACAGAGTATGTATGGACAACTTGTTCTTGGG
attgtataatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccattagcataaacaaaatcctacattagatttttatgctaatcgtactgttgttttctttttgtgattgtataatctttatgatgcgattattgaacagATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTATCGGAGACAATGAGGTAGAACAGAGTATGTATGGACAACTTGTTCTTGGG
- - - gcataaa
- - - - - - -caaaatc