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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaattcctacctaatcctcatacaatctcatgaccataataaatattttacccttggttttgtatgcttggggcatttctgagctatacgaactctgttgttgtttcagCAATGGTATGTGCAGTACCCAGAGGAAGCCCCGTGGTATGAGCTGCTTGTAATCCCTTTGCGGTTTGAACTCCTATGTTCCATCATGATACCCATCTCCA

Basic information

species Arabidopsis thaliana
transcript AT5G44240.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44240.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA13G37090.1 (Glycine max), 3'ss of exon 8
gttagaattcctacctaatcctcatacaatctcatgaccataataaatattttacccttggttttgtatgcttggggcatttctg-agctatacgaactctgttgttgttt-cagCAATGGTATGTGCAGTACCCAGAGGAAGCCCCGTGGTATGAGCTGCTTGTAATCCCTTTGCGGTTTGAACTCCTATGTTCCATCATGATACCCATCTCCA
           | ||| ||| |    || |||  |||   |  |  || ||||     || | |  | | |  |  |||| |  | || |   |    |   ||||| ||  |||| ||||||||| |  |||||  | ||||  || |||||||| ||| | || || |||||||| ||||| || || |||||||||||||||||||| || |
---------gatgccttatcttttatcattctattgaagtt--tccatgttttg----tgatgtgatcttcaagatgcatgtaggtagatcctcatttttgtttgtttttcacagCTATGGTATGTTCTTTACCCTCATGAAGGTCCCTGGTATGAACTGTTGGTCATTCCTTTGCGATTTGAGCTTCTTTGTTCCATCATGATACCCATTTCAA

upper sequence: AT5G44240.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA12G33340.1 (Glycine max), 3'ss of exon 8
gttagaattcctacctaatcctcatacaatctcatgaccataataaatattttacccttggttttgtatgcttggggcatttctg-agctatacgaactctgttgttgttt-cagCAATGGTATGTGCAGTACCCAGAGGAAGCCCCGTGGTATGAGCTGCTTGTAATCCCTTTGCGGTTTGAACTCCTATGTTCCATCATGATACCCATCTCCA
           | ||| ||| |    || |||  |||   |  |  || ||||     || | |  | | |  |  |||| |  | || |   |    |   ||||| ||  |||| ||||||||| |  |||||  | ||||  || |||||||| ||| | || ||||||||||| || || || || |||||||||||||||||||| || |
---------gatgccttatcttttatcattctattgaagtt--tccatgttttg----tgatgtgatcttcaagatgcatgtaggtagatcctcatgtttgtttgtttttcacagCTATGGTATGTTCTTTACCCTCATGAAGGTCCCTGGTATGAACTGTTGGTCATCCCTTTGCGATTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttgtatgcttggggcatttctgagctatacgaactctgttgttgtttcagCAATGGTATGTGCAGTACCCAGAGGAAGCCCCGTGGTATGAGCTGCTTGTAATCCCTTTGCGGTTTGAACTCCTATGTTCCATCATGATACCCATCTCCA
                                              ttgtttc  CT-rich tract