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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttgagataaacactactggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcagTATAATATGACAAAACTGAGGGAAGGGGCACAGATGCAAGTCCTAGAAGCTGATCATATCATCATTTGTGGAATAAACAGTCATCTACCTTTCATACTAA

Basic information

species Arabidopsis thaliana
transcript AT5G43745.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43745.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 7
gtaagttcttgagataaaca-ctactggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcagTATAATATGACAAAACTGAGGGAAGGGGCACAGATGCAAGTCCTAGAAGCTGATCATATCATCATTTGTGGAATAAACAGTCATCTACCTTTCATACTAA
||||| |||||| |  |  | ||  |  | ||   |  | ||   ||  |  |  | | |     | |  | ||| ||| ||||||||  |||||| || ||||| ||||||||||||||  | || |||||||||||| | ||||||||||| || ||||||||  | |||||||| |
gtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcatttacctccttatgaccatcatttggacagAATAATATGCAAAAACTTAGAGAAGGAGCACAGATGCAAGTTATGGAGGCTGATCATATCGTTATTTGTGGAATCAATAGTCATCTGACCTTCATACTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcagTATAATATGACAAAACTGAGGGAAGGGGCACAGATGCAAGTCCTAGAAGCTGATCATATCATCATTTGTGGAATAAACAGTCATCTACCTTTCATACTAA
                                tcctgat  putative branch site (score: 3)
                                         ctttgtct  putative PPT
      aaaaatgaatgttaat  TA-rich tract