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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaaccagtttagtcactgagatatatcataaatctgttagtccttgagaaatacttctctttagctctctttactcttctatcattttcgttgggatttccaagagatgtaattttgattttcatagtttgttgtgtttcttacgtgctcttacatgggccaactttgttaaatttgaagTTTTCGAACAAGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATG

Basic information

species Arabidopsis thaliana
transcript AT5G43710.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43710.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 6
gtgagtaaaccagtttagtcactgagatatatcataaatctgttagtccttgagaaatacttctctttagctctctttactcttctatcattttcgttgggatttccaagagatgtaattttgattttcatagtttgttgtgtttcttacgtgctcttacatgggccaactttgttaaatttgaagTTTTCGAACAAGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATG
                                                                           |||  |||  | | ||||||  |||| | |  |  |   | | | |||  ||||||| | |||| |||| ||||     || ||   |       ||| ||  |  || |||||| ||||||||| | |||||||| ||| | ||||| |||||||| |||||||| ||  || |||| |||||||| || ||||| ||||||||||||||
--------------------------------------------------------------------------atttggtctcttgt-attttc--tggggtctgaataatggggagtattg--tttcata-tctgtt-tgttacttaaaa--tcctatccgattg---tttctttgacatgcagTTTTTGAACAAGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATG

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 8
gtgagtaaaccagtttagtcactgagatatatcataaatctgttagtccttgagaaatacttctctttagctctctttactcttctatcattttcgttgggatttccaagagatgtaattttgattttcatagtttgttgtgtttcttacgtgctcttacatgggccaactttgttaaatttgaagTTTTCGAACAAGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATG
                                                                              || |    |  ||| |  |     |||    | |  |  || ||    || || |||    | | ||||          ||  |  | | |   |  || |  || ||||||||| |||||| |||||||||| |||   ||| ||||||| || || ||||| ||  || | ||||||||||| |||||||| ||||||||||||||
---------------------------------------------------------------------------caaacacaaacacgattcttctcct--tttttgggtggagggatctttgcatttattgttgaaagaggttcta---------tatttatgtccatcctcatatacatgcagTTTTCGAGCAAGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgttgtgtttcttacgtgctcttacatgggccaactttgttaaatttgaagTTTTCGAACAAGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATG
                                    aactttgttaaattt  TA-rich tract