1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtaacattatcatttacttttcaagcatttgcgatccgcggttgcgttttgttatattgtttttcataaaaaataaaattttgtttgttgtttatttcagGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGGCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCATAAA
species | Arabidopsis thaliana |
transcript | AT5G40780.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGCCATCTACAAACCCAAGAAATACAGCTTGTCTTGGTGGGCCAACTGG GTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGGEST: gi|86086870|gb|DR382629.1|DR382629
genomic: TAGCCATCTACAAACCCAAGAAATACAGCTTGTCTTGGTGGGCCAACTGGgtaagtaaca ... tttatttcagGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGG
EST: TAGCCATCTACAAACCCAAGAAATACAGCTTGTYTTGGTGGGCCAACTGG GTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGG
genomic: TAGCCATCTACAAACCCAAGAAATACAGCTTGTCTTGGTGGGCCAACTGGgtaagtaaca ... tttatttcagGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGG
gttttgttatattgtttttcataaaaaataaaattttgtttgttgtttatttcagGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGGCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCATAAA
tttatttc CT-rich tract
ttatattgtttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacattatcatttacttttcaagcatttgcgatccgcggttgcgttttgttatattgtttttcataaaaaataaaattttgtttgttgtttatttcagGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGGCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA