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gtactgacaaaaatatttgcgtgctattgttgtatttatagtattgtttttgctcatttaacatcacttttctattcactttggcaattagATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATAT
species | Arabidopsis thaliana |
transcript | AT5G28900.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAG ATACTCCTCATATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTEST: gi|116435329|gb|EG477921.1|EG477921
genomic: GATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGgtactgacaa ... tggcaattagATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCT
EST: GATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAG ATACTTCTCATATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTEST: gi|124831945|gb|EH916384.1|EH916384
genomic: GATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGgtactgacaa ... tggcaattagATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCT
EST: ATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAG ATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCEST: gi|116435322|gb|EG477914.1|EG477914
genomic: ATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGgtactgacaa ... tggcaattagATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTC
EST: GATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAG ATACTCCTCATATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCT
genomic: GATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGgtactgacaa ... tggcaattagATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCT
tatagtattgtttttgctcatttaacatcacttttctattcactttggcaattagATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATAT
atttaac putative branch site (score: 3)
cttttctattcacttt putative PPT
tattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgacaaaaatatttgcgtgctattgttgtatttatagtattgtttttgctcatttaacatcacttttctattcactttggcaattagATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA