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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcaaaatatcttaattatttatggcagctacgctgtgtcataagtatgcataatatctatcatttggtcgacagAAATATCTCCAATTTCTAGAAGAAGCCAAAAAGTATGACCACAGACTATTGGGCCAAAAGCAGGAACTCTTCTTTAGTCATCAACTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G26830.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063891|gb|DR359648.1|DR359648
EST:     GATATCTTATCCTGATCAGAAGCAGCTGAAG                         AAATATCTCCAATTTCTAGAAGAAGCCAAAAAGTATGACCACAGACTATTG
genomic: GATATCTTATCCTGATCAGAAGCAGCTGAAGgtactcaaaa ... tggtcgacagAAATATCTCCAATTTCTAGAAGAAGCCAAAAAGTATGACCACAGACTATTG
EST: gi|164201279|gb|ES045858.1|ES045858
EST:     GCTTACAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAAG                         AAATATCTCCAATTTCTAGAAGAAGCCAAAAAGTA
genomic: GCTTGCAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAAGgtactcaaaa ... tggtcgacagAAATATCTCCAATTTCTAGAAGAAGCCAAAAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggcagctacgctgtgtcataagtatgcataatatctatcatttggtcgacagAAATATCTCCAATTTCTAGAAGAAGCCAAAAAGTATGACCACAGACTATTGGGCCAAAAGCAGGAACTCTTCTTTAGTCATCAACTCAG
                              ataatatctatcattt  TA-rich tract