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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtatattattttttcatctatgaatcgttggactccttagtttttatggcatccacttcaaagcaattgaatctaggactcgtattaatatatgtataaatttccactctccagGTGACAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G26680.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26680.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA20G22190.2 (Glycine max), 3'ss of exon 7
gtagtatattattttttcatct-atgaatcgttggactccttagtttttatggcatccacttcaaagcaattgaatctaggactcgtattaatatatgtataaatttccactctc-cagGTGACAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTGAG
|| |  |  | ||| ||   || ||  ||  |   |    ||     |||||| ||  |    |||| |      | |  |   | |  |  |      |||  |    | |||  ||||||||||||||||||||||| |||||||||||||| || || |||||||| |||||||||||||||
gtgggtttctgtttcttaggctcatttatt-tgaaaagttttgcacattatgg-atagag---aaagaagcatggtttttggtgcatgctgttgaggccatatctccatattcttgcagGTGACAAAACAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCTGTTGTTGAG

upper sequence: AT5G26680.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA10G28200.2 (Glycine max), 3'ss of exon 7
gtagtatattattttttcatctatgaatcgttggactccttagtttt-tatggcatccacttc-aaagcaattgaatctaggactcgtattaatatatgtataaatttccactctc-cagGTGACAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTGAG
|| |  |  | ||| ||   ||   | |  ||    |    ||||||  |    ||  |     |||| |      | |      | |  || |      |||  |    | |||  ||||| ||||| ||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||
gtgggtttctgtttcttaggctc--atttattttttttaaaagttttgcacattatggatagagaaagaagcatgtttttttgtgcatgctattgaggccatatctccatattcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagcaattgaatctaggactcgtattaatatatgtataaatttccactctccagGTGACAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTGAG
                       tattaat  putative branch site (score: 2)
                                         tttccactctcc  putative PPT
                    tcgtattaatatatgt  TA-rich tract