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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcttcatatctgagtattgtatctctactgcattctctttactcttggtcctaattgattagatatatgtttccagGGTACTTTTTGAACTAATATGGAGAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAG

Basic information

species Arabidopsis thaliana
transcript AT5G24850.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24850.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0008g02670.t01 (Vitis vinifera), 3'ss of exon 7
-------------------------------------------------------------gtatatcttcat--atctgagtattgtatctctactgcattctctttactct--tggtc-----ctaattgattagatat------atgtttccagGGTACTTTTTGAACTAATATGGAGAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAG
                                                              || ||||   |  | |||  || |   ||||  | |  ||   || |||    | |||      |  || |||| || |      ||| || ||||||  | |||||| | ||||||||||||||||||||||| || ||| |||| |   |||| || |||||||||||||
gtatgactcgctcttcatcatctcatatccccttttggtgttttgatttttaccatgatctttagatctgtgttgagctggatactaactctcagcagt-ttggtttaacttcagtagtcactgtttttttcattaaatgtgttttcatggtttcagGGTGTTGTTTGAATTGATATGGAGAGATTACTTCAGGTTCCTGTCAGTTAAATACAGAAATTCTCTTTTTCATCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctactgcattctctttactcttggtcctaattgattagatatatgtttccagGGTACTTTTTGAACTAATATGGAGAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAG
                                              tgtttcc  CT-rich tract
                              taattgattagatata  TA-rich tract