Sequence
atgc intronic sequence ATGC exonic sequence...cattagaaatttaatgactttagaagctgaaagatgtttattccttttttgttttcctgctacttacctcttacacctcctttgttactctaaatgacagTCGTCTGAGAGTGTACTCATTCTGGAGTACATGGATGGAGTACGTTTGAATGATGTGGAATCTCTAGATGCTTTTGGTGTGGATAAACAAAAGATCGTTG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G24810.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G24810.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G24420.1 (Glycine max), 3'ss of exon 6
-cattagaaatttaatgactttagaagctgaaagatgtttattccttttttgttttcctgctacttacctcttacacctcctttg-ttactctaaatgacagTCGTCTGAGAGTGTACTCATTCTGGAGTACATGGATGGAGTACGTTTGAATGATGTGGAATCTCTAGATGCTTTTGGTGTGGATAAACAAAAGATCGTTG
|| |||| |||| || | | | |||||| ||| | |||| | || | | | |||| || || ||||| |||| | |||| || || || |||||||||||||||| | || ||||||||| | ||||| ||||| |||| ||| || |||||||||||| | ||||
gggttcaaaatgaaatgtgcttcctgttt--attcttcttattcttttatcttttttccatagtttttcctacttatataatttggttgcttccaatgatagTCTACAGAGAAAGTCCTTGTTTTGGAGTACATGGATGGCATTCGGTTGAATGATTTAGAATCACTAGACGCTTATGGAGTAGATAAACAAAAGCTTGTTG
upper sequence: AT5G24810.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA14G20110.1 (Glycine max), 3'ss of exon 7
cattagaaatttaa--tgactttagaagctgaaagatgtttattccttttttgttttcctgctacttacctcttacacctcctttg-ttactctaaatgacagTCGTCTGAGAGTGTACTCATTCTGGAGTACATGGATGGAGTACGTTTGAATGATGTGGAATCTCTAGATGCTTTTGGTGTGGATAAACAAAAGATCGTTG
|||| || || ||| | | ||| || |||||| ||| | |||| | | || || | | | | || || || ||| | |||| | || | || || || |||||||||||||||| | || ||||||||| | ||||| ||||| |||| ||| || |||||||||||| | ||||
--ttaggggttcaaaatgaatgtgcttcctgttt-attcttattcttttatctttttgccataatttttcttatttatataatctggttgcttccaattatagTCTACAGAAAAAGTCCTTGTTTTGGAGTACATGGATGGCATTCGGTTGAATGATTTAGAATCACTAGAAGCTTATGGAGTAGATAAACAAAAGCTTGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgttttcctgctacttacctcttacacctcctttgttactctaaatgacagTCGTCTGAGAGTGTACTCATTCTGGAGTACATGGATGGAGTACGTTTGAATGATGTGGAATCTCTAGATGCTTTTGGTGTGGATAAACAAAAGATCGTTG
cctcctttgttactct CT-rich tract
tttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattagaaatttaatgactttagaagctgaaagatgtttattccttttttgttttcctgctacttacctcttacacctcctttgttactctaaatgacagTCGTCTGAGAGTGTACTCATTCTGGAGTACATGGATGGAGTACGTTTGAATGATGTGGAATCTCTAGATGCTTTTGGTGTGGATAAACAAAAGATCGTTG
- - - - - - - - - - - - - ctgaaag