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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacttttgctttatttgtttctgtctccttttttgtctactgcgcttgtctgtgaaaagtctggaaggcaacaagttttgaactaatatatgaatccttcttgtgatacctttctagGTAAAAATTCCGTTTGAGAAACCTGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTGCTTACGAGTAGATAATGAATGGCCAGACATCAG

Basic information

species Arabidopsis thaliana
transcript AT5G23510.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124980104|gb|EL053082.1|EL053082
EST:     TTACAGAAAAGTTCTCAGCTTCTACTGCT                         GTAAAAATTCCGTTTGAGAAACCTGCAGAACTTGTTATCATTGGTTCTGAT
genomic: TTACAGAAAAGTTCTCAGCTTCTACTGCTgtaagacttt ... acctttctagGTAAAAATTCCGTTTGAGAAACCTGCAGAACTTGTTATCATTGGTTCTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaggcaacaagttttgaactaatatatgaatccttcttgtgatacctttctagGTAAAAATTCCGTTTGAGAAACCTGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTGCTTACGAGTAGATAATGAATGGCCAGACATCAG
                  aactaat  putative branch site (score: 2)
                                            tacctttct  putative PPT
             ttttgaactaatatat  TA-rich tract