Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttatcctaaaaaaaagatgatccactaatcgaccaatgaactaaaaccttttctgatgggtttttggatattttcatgttctcttccttagGGAAAGATTCCATTGATAGGCTGTGGCGGGGTTAGTAG

Basic information

species Arabidopsis thaliana
transcript AT5G23300.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741512|gb|AU226865.1|AU226865
EST:     TCTCCACCAACATGTTGAGAGATATGTACACTTTGACACGA                         GGAAAGATTCCATTGATAGGGCTGTGGCGGGGTTAGTAG
genomic: TCTCCACCAACATGTTGAGAGATATGTACACTTTGACACGAgtaagttctt ... tcttccttagGGAAAGATTCCATTGATA-GGCTGTGGCGGGGTTAGTAG
EST: gi|116483520|gb|EG526112.1|EG526112
EST:     TCTTTGCTCTCTCCACCAACATGTTGAGAGATATGTACACTTTGACACGA                         GGAAAGATTCCATTGATAGGCTGTGGCGGGGTTAGTAG
genomic: TCTTTGCTCTCTCCACCAACATGTTGAGAGATATGTACACTTTGACACGAgtaagttctt ... tcttccttagGGAAAGATTCCATTGATAGGCTGTGGCGGGGTTAGTAG
EST: gi|164162430|gb|ES025950.1|ES025950
EST:     TCTTTGCTCTCTCCACCAACATGTTGAGAGATATGTACACTTTGACACGA                         GGAAAGATTCCATTGATAGGCT
genomic: TCTTTGCTCTCTCCACCAACATGTTGAGAGATATGTACACTTTGACACGAgtaagttctt ... tcttccttagGGAAAGATTCCATTGATAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaactaaaaccttttctgatgggtttttggatattttcatgttctcttccttagGGAAAGATTCCATTGATAGGCTGTGGCGGGGTTAGTAG
                                tattttcatgttctct  CT-rich tract
                        tttttggatatttt  TA-rich tract