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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattctgttccttgtatctcaagtcattatctctgtttctttcatagggttgcttatatgtcacgtaactgagtttaaatccttttctatttctgattttgttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT

Basic information

species Arabidopsis thaliana
transcript AT5G22740.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA11G19490.1 (Glycine max), 3'ss of exon 7
gtatattctgttccttgtatctcaagtcattatctctgtttctttcatagggttgcttatatgtcacgtaactgagtttaaatccttttctatttctgattttgttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT
                |||||   | |  ||     |||||    | |    ||    ||| || |    | | | ||    | ||     || | ||    |  |    ||||| ||||| || |||||||||||||| || || ||||||||||||||  ||||||| || ||||| ||  | || ||||| || |||   || ||||||
----------------gtatcattaat--tttctattgttttacactttcaatttgccata-gttagtccattaattt--gtttctaaaagatgtgtggaact--ttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT

upper sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA12G08990.1 (Glycine max), 3'ss of exon 7
gtatattctgttccttgtatctcaagtcattatctctgtttctttcatagggttgcttatatgtcacgtaactgagtttaaatccttttctatttctgattttgttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT
                ||||    | |  | ||||   |||      |    ||||    ||     ||   | | |||  |||       || | ||    |  |    ||||| ||||| || |||||||||||||| || || ||||||||||||||  ||||||| || ||||| ||  | || ||||| || |||   || ||||||
----------------gtatgattaatt-tgatcttgttttacacttttaacttgccataatagttagtccattaattttgatctaaaaagatgtgtggaact--ttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT

upper sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv06s0061g01230.t01 (Vitis vinifera), 3'ss of exon 7
gtatattctgttccttgtatctcaagtcattatctctgtttctttcatagggttgcttatatgtcacgtaactgagtttaaatccttttctatttctgatttt--gttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT
      ||   | ||  | ||||    ||  |||| | | |  || ||  |||     | | |   | ||||    | ||  |  ||    |  ||   || |    |    ||||||||||| || |||||||| |||||||| || ||||||||||||||  | |||||||| ||||||||||| || |||||| | || ||||| || |||
-----gtccacttctcctctctc----caccatct-tatgtgatttatttggt-atcgaaaagctccataac---atatatgttgttcctaagctcaatttcttaaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTCCACCGGACCAAGGCCACTCTTATCGGTCTGCTAGAAGCAGGGAGAGCT

upper sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: PP1S36_214V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------gtatattctgttccttgtatctcaagtcattatctctgtttc---tttcataggg-ttgcttatatgtcacgtaactgagtttaaatccttttctatttctgattttgttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT
                           ||  || |  ||| || |  ||||   || | |||    ||  | |  | || |    |||  |     | |   ||  |||      | || |  | | |||   | |||||| | ||  |  || | |  |||||||| ||||||||||||||||||||||||||||| ||||| ||  | |||||| |||||||    || |  |  
gtaagttactattcctgatgtcaccgatcgattgcgcgtacctgatctcatatgctgtattttaaattctacaaagatttcgaggatgctaacatgccgtacttgcatcacaccatgttcc--actgtgtc--acagGTCACTGCACTTATTGGTTTTCTGGATTCTGTTCGAGAATGTGATGTCGCTGCACCGGACGAAGGCGACGATAATTGGTTTGTTTGACATCGGTAACGTG

upper sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: PP1S36_62V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------gtatattctgttccttgtatctcaagtcatta--tctctgtttctttcatagggttgcttatatgtcacgtaactgagtttaaatccttttctatttctgatttt----gttcaaa----agGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT
            |  ||||||       |  |  | ||       | |  | | |  | || |  | |   |       |   | | ||| ||  |||   |  |  |||| |  |    |  ||||    |||||  | ||  || || | |  ||||| || |||||||| |||||||||||||||||||||||||| ||  | || ||  |||||||    || |  |  
gtaagtcgcagtttcattctgcattgaattccagaggttgacgagtttgcgctgcagttatggcttcgacaactccgtccaagaataagtatat-tccacgtgcacgtctgctaattggggaccaaattgcagGTCTCTACACTTGTTGGTGTTCTGGATCCTGTTCGAGAACGTGATGTCGCTGCACCGGACAAAGGCGACGATTATCGGATTGTTTGACATTGGTAATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatgtcacgtaactgagtttaaatccttttctatttctgattttgttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT
                                    ttctgat  putative branch site (score: 3)
                         tccttttctatttctg  CT-rich tract
                            ttttctattt  TA-rich tract