1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgcaaaaaatgcctctgaatatcttatgatctgactatcttttccagaaactgaaaaataagccgttgtatctttatcactatgtttggacttttttcagGAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAG
species | Arabidopsis thaliana |
transcript | AT5G17620.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACAGCTAGGGCATTCAATACAATCTACACAAAG GAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTEST: gi|86077830|gb|DR373587.1|DR373587
genomic: AACAGCTAGGGCATTCAATACAATCTACACAAAGgtatttcttt ... cttttttcagGAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTT
EST: TAGAATCGTTTCTTGAAACAGCTAGGGCATTCAATACAATCTACACAAAG GAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTEST: gi|86088289|gb|DR384048.1|DR384048
genomic: TAGAATCGTTTCTTGAAACAGCTAGGGCATTCAATACAATCTACACAAAGgtatttcttt ... cttttttcagGAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTT
EST: ATCGTTTCTTTGGAAACAGCTAGGGCATTCAAATGCAATCTACGCAAAGG GAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTT
genomic: ATCGTTTC-TT-GAAACAGCTAGGGCATTC-AATACAATCTACACAAA-Ggtatttcttt ... cttttttcagGAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTT
agaaactgaaaaataagccgttgtatctttatcactatgtttggacttttttcagGAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAG
cttttttc CT-rich tract
tgaaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaaaaaatgcctctgaatatcttatgatctgactatcttttccagaaactgaaaaataagccgttgtatctttatcactatgtttggacttttttcagGAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- caaaaaa
- - - - - - - - - - - - - - - - - - - - - - cagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg