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gtaattacaaaactttgttgcgttactgtaaacactagtgtagtgttcatgtaattcctcactgtttgcatgttttatgcgtcatacacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAG
species | Arabidopsis thaliana |
transcript | AT5G14260.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAATAGTTGAG GCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCTEST: gi|125023359|gb|EL095628.1|EL095628
genomic: TAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCT
EST: CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAAG GCAGCGTTGAACACTGAGGATCCTCEST: gi|125261935|gb|EL276020.1|EL276020
genomic: CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGA-Ggtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTC
EST: TGATGAGGATAACCCTTATGATAGAGTAATAGTTGAG GCAGCGTTGAACACTGAGGAATCCTCAATAEST: gi|125257128|gb|EL271213.1|EL271213
genomic: TGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGA-TCCTCAATA
EST: CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAG GCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGEST: gi|124746763|gb|EH837065.1|EH837065
genomic: CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTG
EST: TGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAG GCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCT
genomic: TGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCT
agtgttcatgtaattcctcactgtttgcatgttttatgcgtcatacacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAG
tcctcac putative branch site (score: 2)
atgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattacaaaactttgttgcgttactgtaaacactagtgtagtgttcatgtaattcctcactgtttgcatgttttatgcgtcatacacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA