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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactccaaatcatttaaccatagatatcttattttctgtaaaaattacctgcaataacgttaatcatattcggaatgtttttatctattctgatagATTGAAATAATGTTGAGGTTACGGCATCCAAACGTTGTTCTTTTCATGGGAGCAGTTACTCGTCCCCCAAATTTCTCCATCCTGACAGAGTTCCTACCCA

Basic information

species Arabidopsis thaliana
transcript AT5G11850.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G11850.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 3'ss of exon 7
gtaactccaaatcattta-accatagat-atcttattttctgtaaaaattacctgcaataacgttaatcatattcggaatgtttttatcta-----ttctgatagATTGAAATAATGTTGAGGTTACGGCATCCAAACGTTGTTCTTTTCATGGGAGCAGTTACTCGTCCCCCAAATTTCTCCATCCTGACAGAGTTCCTACCCA
|||| | |     ||||| | | || || ||  ||||      ||   | |  |    |  | |||   | ||||  | |  |    |||      |||  | || ||||||| |||||||| ||  ||||||| || ||||||||||| |||||||| |||||||| ||||||||| |||| || || |||||||| || || |
gtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaaattaataccttctggttgcttcatacagGTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattacctgcaataacgttaatcatattcggaatgtttttatctattctgatagATTGAAATAATGTTGAGGTTACGGCATCCAAACGTTGTTCTTTTCATGGGAGCAGTTACTCGTCCCCCAAATTTCTCCATCCTGACAGAGTTCCTACCCA
                                    tttttatctattct  CT-rich tract
                                aatgtttttatctatt  TA-rich tract