Sequence
atgc intronic sequence ATGC exonic sequencegtatgtaaaatcttcaaacttggtctagctaatttaacaatcattgtctgtggttaattagttagtcctggtgttgttgttgtagCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G10510.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G10510.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA01G02760.1 (Glycine max), 3'ss of exon 8
------------gtatgtaaaatcttcaaacttggtc---tagctaatttaacaatcattgtctgtggttaattagttagtcctggtgttgttgttgtagCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGA
| | | | || || ||| || | | | ||| | || |||| | || | | | | || |||||| || ||||||||||| || || ||||| || ||||| || || |||||||| |||||| ||||| |||||||||||||| | || || || ||
tggcttgacttgaaacagtgattttacattgtttgtcatttatatgaggtggaaatagaatattctgaataatcatctaactcagttcacatggtaacagCAACCGAGGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAACGCGGTAACCAACTTTGAGATGAATAGATATGATGTGGA
upper sequence: AT5G10510.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA09G33240.1 (Glycine max), 3'ss of exon 8
-----------gtatgtaaaat-cttcaaacttggtctagctaatttaacaatc--attgtctgtggttaattagttagtcctggtgt-tgttgttgtagCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGA
| || | | | | | | || | | | ||| || || || |||| | || | | | | || |||||| || ||||||||||| || || ||||| || ||||| || || |||||||| |||||| ||||| |||||||||||||| | || || || ||
tttgacttgaaacagttagtttacattagttatcatttatatgaggtggaaatagaatattccatgaataatcatctaactcagttccacatggtaacagCAACCGAGGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATTAAGTTCAGAGGTGCAAACGCAGTAACCAACTTTGAGATGAATAGATATGATGTGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttaacaatcattgtctgtggttaattagttagtcctggtgttgttgttgtagCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGA
ttaattagtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtaaaatcttcaaacttggtctagctaatttaacaatcattgtctgtggttaattagttagtcctggtgttgttgttgtagCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG