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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctaaaaatcgtcattcaaagtttacatgatatacatagatagtcttaatattatggtctttgctaattcattgttattactactttgctgatttacatatattgcggcagGCCCCCTGAATTACTACTTGGGGCTACAAAATATGGCCCAGCAATTGACATGTGGTCGGTTGGTTGCATATTTGCCGAACTTTTGCATGCAAAACCAATC

Basic information

species Arabidopsis thaliana
transcript AT5G10270.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0141g00280.t01 (Vitis vinifera), 3'ss of exon 7
gtaagcctaaaaatcgtcattcaaagttt-acatgatatacatagatagtctta-atattatggtctttgcta--attcattgttattactactttgctgatttacatatattgcggc------agGCCCCCTGAATTACTACTTGGGGCTACAAAATATGGCCCAGCAATTGACATGTGGTCGGTTGGTTGCATATTTGCCGAACTTTTGCATGCAAAACCAATC
||||      | ||   | |     |||| | |     ||  |  || ||  |  || ||      ||| | |  ||    |    ||   | || | ||||| |  | |||   |        ||||| || ||||| || || || || ||||| |||||||| ||  ||||||||||||| || ||||| || ||||| || |||||| ||| ||||||||| 
gtaaaatattacattaacctcatgtgttttaaactgcctagctcaattgttgtgcatgttgcatcttttccaagaataagctccgcttttcatttagttgattcaggtttatattgatttgcatagGCCACCAGAATTGCTGCTAGGAGCCACAAAGTATGGCCCTGCTGTTGACATGTGGTCCGTCGGTTGTATCTTTGCTGAGCTTTTGTATGGAAAACCAATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttgctaattcattgttattactactttgctgatttacatatattgcggcagGCCCCCTGAATTACTACTTGGGGCTACAAAATATGGCCCAGCAATTGACATGTGGTCGGTTGGTTGCATATTTGCCGAACTTTTGCATGCAAAACCAATC
        taattcattgttatta  TA-rich tract