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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccataacatcttctcctaaaacccatccgtctcttctattcgtcatacattatccggttttctaatgtcttactctatctgttttccaatcagTGGGGAGAAGGAAACTGCAGAACTTTTGTTAGGAAAATTCAAATGGGGTCATGCCTTTTTATCTTTGAACAA

Basic information

species Arabidopsis thaliana
transcript AT5G10070.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874774|gb|AU235605.1|AU235605
EST:     CCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTA-TACTATG                         TGGGGAGAAGGAAACTGCANAACTTTTGTTAGGAAAATTCAANGGGGGTCA
genomic: CCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgtgagtccat ... ttccaatcagTGGGGAGAAGGAAACTGCAGAACTTTTGTTAGGAAAATTCAAATGGGGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtcatacattatccggttttctaatgtcttactctatctgttttccaatcagTGGGGAGAAGGAAACTGCAGAACTTTTGTTAGGAAAATTCAAATGGGGTCATGCCTTTTTATCTTTGAACAA
                                  ctctatctgttttcc  CT-rich tract
 atacattat  TA-rich tract