Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagtgaggacacctggtttagccataaaagttataatatacattcactgccaataatggatgatgatacaattcagGTATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCATTGTGTGAATG

Basic information

species Arabidopsis thaliana
transcript AT5G08380.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044318|gb|DR340073.1|DR340073
EST:     TACTTGAAGTATGACAACTGCAACAGCGATGGCTCTAAACCTACTGTCAG                         GTATCCAGTGATGACTCGAGCTCTG
genomic: TACTTGAAGTATGACAACTGCAACAGCGATGGCTCTAAACCTACTGTCAGgtataagtga ... tacaattcagGTATCCAGTGATGACTCGAGCTCTG
EST: gi|86026650|gb|DR322403.1|DR322403
EST:     AGCGATGGCTCTAAACCTACTGTCAG                         GTATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCA
genomic: AGCGATGGCTCTAAACCTACTGTCAGgtataagtga ... tacaattcagGTATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccataaaagttataatatacattcactgccaataatggatgatgatacaattcagGTATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCATTGTGTGAATG
     aaagttataatataca  TA-rich tract